Variant report

Variant	rs2035069
Chromosome Location	chr11:46844960-46844961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46828755..46831301-chr11:46844947..46847653,2	K562	blood:
2	chr11:46841346..46843709-chr11:46844716..46847621,2	K562	blood:
3	chr11:46839791..46842440-chr11:46844022..46846821,2	MCF-7	breast:
4	chr11:46844063..46849810-chr11:46866303..46869226,7	MCF-7	breast:
5	chr11:46842194..46845139-chr11:46848231..46850202,2	K562	blood:
6	chr11:46839480..46843439-chr11:46844955..46847096,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247675	Chromatin interaction
ENSG00000175216	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10734547	1.00[AMR][1000 genomes]
rs10734550	1.00[AFR][1000 genomes]
rs10769215	1.00[AFR][1000 genomes]
rs1380949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1585455	1.00[AFR][1000 genomes]
rs3136438	1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs3136466	1.00[AFR][1000 genomes]
rs35569076	1.00[AMR][1000 genomes]
rs35652367	1.00[AMR][1000 genomes]
rs4237546	1.00[AMR][1000 genomes]
rs4423141	1.00[AMR][1000 genomes]
rs4448646	0.83[AFR][1000 genomes]
rs4752938	1.00[AMR][1000 genomes]
rs4752943	1.00[AFR][1000 genomes]
rs4752945	1.00[AFR][1000 genomes]
rs6485698	1.00[AFR][1000 genomes]
rs6485699	1.00[AFR][1000 genomes]
rs6485701	0.83[AFR][1000 genomes]
rs6485707	1.00[AFR][1000 genomes]
rs7111229	1.00[AFR][1000 genomes]
rs7111243	1.00[AFR][1000 genomes]
rs7118042	0.83[AFR][1000 genomes]
rs7119251	0.83[AFR][1000 genomes]
rs7128533	1.00[AFR][1000 genomes]
rs72550708	0.83[AFR][1000 genomes]
rs7950924	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430382	chr11:46743135-46849360	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46761400-46845200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:46782600-46847400	Weak transcription	Stomach Mucosa	stomach
3	chr11:46812000-46847600	Weak transcription	Right Ventricle	heart
4	chr11:46814600-46845800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:46815200-46847800	Weak transcription	Gastric	stomach
6	chr11:46816400-46847800	Weak transcription	Spleen	Spleen
7	chr11:46818800-46846800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:46819000-46847400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:46819200-46847600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:46819600-46847600	Weak transcription	Brain Angular Gyrus	brain
11	chr11:46819600-46847800	Weak transcription	Pancreas	Pancrea
12	chr11:46819800-46847400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:46820800-46847600	Weak transcription	Small Intestine	intestine
14	chr11:46821600-46847600	Weak transcription	Psoas Muscle	Psoas
15	chr11:46824200-46847600	Weak transcription	Right Atrium	heart
16	chr11:46828800-46847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:46830400-46847400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:46831200-46847600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr11:46831400-46847400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:46831400-46847800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:46831800-46846800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:46831800-46846800	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:46832000-46847000	Weak transcription	Brain Anterior Caudate	brain
24	chr11:46832000-46848000	Weak transcription	Lung	lung
25	chr11:46832200-46847600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:46832400-46847000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:46834600-46847600	Weak transcription	Fetal Intestine Small	intestine
28	chr11:46835400-46847600	Weak transcription	Fetal Intestine Large	intestine
29	chr11:46836400-46847600	Weak transcription	Brain Substantia Nigra	brain
30	chr11:46837600-46847000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:46837600-46847600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:46837600-46847800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:46837800-46847000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:46837800-46847400	Weak transcription	Thymus	Thymus
35	chr11:46837800-46847600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:46837800-46847600	Weak transcription	Aorta	Aorta
37	chr11:46837800-46847800	Weak transcription	Esophagus	oesophagus
38	chr11:46837800-46847800	Weak transcription	Fetal Kidney	kidney
39	chr11:46838000-46845200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:46838000-46845800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:46838000-46847000	Weak transcription	NHLF	lung
42	chr11:46838000-46847400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:46838000-46847400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:46838000-46847400	Weak transcription	NH-A	brain
45	chr11:46838000-46847600	Weak transcription	Primary B cells from cord blood	blood
46	chr11:46838000-46847600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr11:46838000-46847600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr11:46838000-46847600	Weak transcription	Fetal Brain Male	brain
49	chr11:46838000-46847600	Weak transcription	Ovary	ovary
50	chr11:46838000-46847600	Weak transcription	Rectal Mucosa Donor 29	rectum

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