Variant report

Variant	rs6485701
Chromosome Location	chr11:46878729-46878730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46866397..46870100-chr11:46875347..46881800,8	K562	blood:
2	chr11:46876816..46880260-chr11:46880871..46884837,6	MCF-7	breast:
3	chr11:46855408..46857227-chr11:46877367..46879435,2	K562	blood:
4	chr11:46877702..46879223-chr11:46879914..46882633,2	K562	blood:

Variant related genes	Relation type
ENSG00000175216	Chromatin interaction
ENSG00000134569	Chromatin interaction
ENSG00000247675	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10734550	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10769209	1.00[AMR][1000 genomes]
rs10769215	0.83[AFR][1000 genomes]
rs1319137	0.86[AFR][1000 genomes]
rs1380949	0.83[AFR][1000 genomes]
rs1386723	1.00[AMR][1000 genomes]
rs1585455	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2035069	0.83[AFR][1000 genomes]
rs3136438	0.83[AFR][1000 genomes]
rs3136466	0.83[AFR][1000 genomes]
rs4268467	1.00[AMR][1000 genomes]
rs4417228	1.00[AMR][1000 genomes]
rs4472899	1.00[AMR][1000 genomes]
rs4752928	1.00[AMR][1000 genomes]
rs4752943	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752945	0.83[AFR][1000 genomes]
rs6485698	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485699	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485707	0.83[AFR][1000 genomes]
rs7106513	1.00[AMR][1000 genomes]
rs7111229	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111243	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118042	1.00[AFR][1000 genomes]
rs7119251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119553	1.00[AMR][1000 genomes]
rs7128533	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72550707	1.00[AMR][1000 genomes]
rs72550708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7950924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868200-46879600	Weak transcription	Left Ventricle	heart
3	chr11:46868200-46880000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:46868400-46878800	Weak transcription	Right Ventricle	heart
5	chr11:46868400-46879200	Weak transcription	Fetal Kidney	kidney
6	chr11:46868400-46879400	Weak transcription	Brain Substantia Nigra	brain
7	chr11:46868400-46879600	Weak transcription	Fetal Intestine Large	intestine
8	chr11:46868400-46879800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:46868400-46880200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:46868400-46880400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:46868400-46884200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:46868600-46879200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:46868600-46879200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:46868600-46879400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:46868600-46879600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:46868600-46879800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:46868600-46879800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:46868600-46879800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:46868600-46879800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:46868600-46880000	Weak transcription	Brain Angular Gyrus	brain
21	chr11:46868600-46880000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:46868600-46880000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:46868600-46885400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:46868600-46894400	Weak transcription	HMEC	breast
25	chr11:46868600-46895200	Weak transcription	Fetal Heart	heart
26	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
27	chr11:46868800-46879600	Weak transcription	Fetal Brain Female	brain
28	chr11:46868800-46879800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:46868800-46884200	Weak transcription	NHEK	skin
30	chr11:46868800-46913000	Weak transcription	A549	lung
31	chr11:46869000-46879800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:46869000-46879800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:46869000-46880200	Weak transcription	Brain Germinal Matrix	brain
34	chr11:46869000-46886800	Weak transcription	NHDF-Ad	bronchial
35	chr11:46872600-46880400	Weak transcription	Esophagus	oesophagus
36	chr11:46873400-46879800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr11:46873400-46879800	Weak transcription	Spleen	Spleen
38	chr11:46873400-46882200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr11:46873600-46879800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:46874200-46880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:46875400-46879800	Weak transcription	Fetal Intestine Small	intestine
42	chr11:46875600-46879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:46875800-46880000	Weak transcription	Placenta	Placenta
45	chr11:46876000-46905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:46876200-46879200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:46876200-46880600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:46876200-46894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:46876600-46889400	Weak transcription	Colonic Mucosa	Colon
50	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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