Variant report

Variant	rs2040609
Chromosome Location	chr17:59694638-59694639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11079451	0.87[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11079454	0.92[CHB][hapmap]
rs11654606	0.87[CHB][hapmap]
rs11867566	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11871785	0.91[CHB][hapmap]
rs1858990	0.82[JPT][hapmap]
rs2106663	0.91[CHB][hapmap]
rs2158005	0.91[CHB][hapmap]
rs4988357	0.92[CHB][hapmap]
rs6504058	0.84[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs7214703	0.91[CHB][hapmap]
rs7219555	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7220740	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7222482	0.91[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9901490	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9908115	0.90[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59693400-59695200	Enhancers	Fetal Lung	lung
2	chr17:59693600-59701200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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