Variant report

Variant	rs7222482
Chromosome Location	chr17:59735681-59735682
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59735025..59736768-chr20:52208193..52210659,2	MCF-7	breast:
2	chr17:59487006..59489833-chr17:59735650..59739438,3	MCF-7	breast:
3	chr17:59734711..59736213-chr17:59754506..59757344,2	MCF-7	breast:
4	chr1:111606368..111606868-chr17:59735117..59735867,2	MCF-7	breast:
5	chr17:59701832..59704293-chr17:59734573..59736545,2	MCF-7	breast:
6	chr17:59734318..59736499-chr17:59939494..59942353,2	MCF-7	breast:
7	chr11:61734589..61736626-chr17:59735174..59737468,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267280	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000167996	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000269089	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11079451	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11079454	0.96[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs11654606	0.91[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs11867566	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11871785	0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.89[ASN][1000 genomes]
rs1858990	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2007931	0.93[ASN][1000 genomes]
rs2040609	0.91[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2106663	0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs2158005	0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs2159451	0.83[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap]
rs35524448	0.88[ASN][1000 genomes]
rs4988357	0.96[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap];0.89[ASN][1000 genomes]
rs56218811	0.80[ASN][1000 genomes]
rs62071871	0.89[ASN][1000 genomes]
rs62071872	0.87[ASN][1000 genomes]
rs6504058	0.87[JPT][hapmap]
rs67223644	0.82[ASN][1000 genomes]
rs7214703	0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs7219555	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7220740	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8064683	0.86[ASN][1000 genomes]
rs9901490	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9908115	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9912366	0.86[ASN][1000 genomes]
rs9915787	0.93[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59728400-59740000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr17:59734400-59738000	Enhancers	HUVEC	blood vessel
3	chr17:59735000-59739800	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links