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Variant report
Variant
rs9901490
Chromosome Location
chr17:59705855-59705856
allele
A/C
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:6)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:6 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr17:59700832..59702613-chr17:59704531..59707151,3
MCF-7
breast:
2
chr17:59693752..59696343-chr17:59703736..59707002,4
MCF-7
breast:
3
chr17:59703865..59706835-chr17:59722983..59724924,2
MCF-7
breast:
4
chr17:59698533..59700055-chr17:59703840..59706711,2
MCF-7
breast:
5
chr16:1824677..1826608-chr17:59703758..59706593,2
MCF-7
breast:
6
chr17:59678271..59681005-chr17:59702144..59706543,4
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000197774
Chromatin interaction
Extended variants information (count: 8 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:8)
rs_ID
r
2
[population]
rs11079451
0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11867566
0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2040609
0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6504058
0.81[ASN][1000 genomes]
rs7219555
0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7220740
0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7222482
0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9908115
0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links