Variant report

Variant	rs7220740
Chromosome Location	chr17:59740793-59740794
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59739868..59742803-chr2:73036349..73039321,2	MCF-7	breast:
2	chr17:59731605..59733134-chr17:59740378..59742568,2	MCF-7	breast:
3	chr17:59739910..59741883-chr17:59763830..59765528,2	MCF-7	breast:
4	chr17:59739596..59741326-chr17:59756120..59757677,2	MCF-7	breast:
5	chr17:59738736..59741211-chr17:59912822..59914383,2	MCF-7	breast:
6	chr17:59738960..59741122-chr17:59903243..59905163,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11079451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079454	0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs11654606	0.91[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs11867566	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11871785	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1858990	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2007931	0.91[ASN][1000 genomes]
rs2040609	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2106663	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2158005	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2159451	0.83[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs35524448	0.86[ASN][1000 genomes]
rs4988357	0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs62071871	0.90[ASN][1000 genomes]
rs62071872	0.85[ASN][1000 genomes]
rs6504058	0.81[JPT][hapmap]
rs67223644	0.80[ASN][1000 genomes]
rs7214703	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7219555	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222482	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8064683	0.84[ASN][1000 genomes]
rs9901490	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9908115	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912366	0.85[ASN][1000 genomes]
rs9915787	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7220740	VEZF1	cis	parietal	SCAN
rs7220740	AKAP1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59739600-59741400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:59739600-59741600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:59739800-59741000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr17:59739800-59741200	Enhancers	Osteobl	bone
5	chr17:59739800-59741400	Enhancers	NHDF-Ad	bronchial

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