Variant report

Variant	rs35524448
Chromosome Location	chr17:59785807-59785808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59692156..59693682-chr17:59783711..59786408,2	MCF-7	breast:
2	chr17:59782208..59785864-chr17:59818424..59822592,3	MCF-7	breast:
3	chr17:59488477..59493840-chr17:59781559..59787606,7	MCF-7	breast:
4	chr17:59784025..59787168-chr17:59909031..59912201,3	MCF-7	breast:
5	chr17:59784609..59786378-chr17:59793738..59795301,2	MCF-7	breast:
6	chr17:59687653..59691207-chr17:59785132..59788535,3	MCF-7	breast:
7	chr17:59775949..59780769-chr17:59781104..59786917,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267280	Chromatin interaction
ENSG00000187013	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11079451	0.86[ASN][1000 genomes]
rs11079454	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11654606	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11867566	0.83[ASN][1000 genomes]
rs11871785	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2007931	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2106663	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158005	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159451	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35090865	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4988357	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56218811	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62071871	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62071872	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6504065	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67223644	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7214703	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219555	0.86[ASN][1000 genomes]
rs7220740	0.86[ASN][1000 genomes]
rs7222482	0.88[ASN][1000 genomes]
rs8064683	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9908115	0.86[ASN][1000 genomes]
rs9912366	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9915787	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9916777	0.80[AMR][1000 genomes]
rs9916780	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59763400-59792800	Weak transcription	NH-A	brain
2	chr17:59766000-59819000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:59767600-59792800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr17:59767600-59793200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr17:59771800-59794600	Weak transcription	HSMM	muscle
6	chr17:59778200-59805800	Weak transcription	Thymus	Thymus
7	chr17:59779400-59790000	Weak transcription	HepG2	liver
8	chr17:59780000-59793400	Weak transcription	Fetal Heart	heart
9	chr17:59780400-59791000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr17:59780800-59793000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:59781000-59791800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr17:59781600-59835400	Weak transcription	Hela-S3	cervix
13	chr17:59782800-59793200	Weak transcription	Fetal Lung	lung
14	chr17:59783000-59793600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr17:59783200-59790200	Weak transcription	A549	lung
16	chr17:59783400-59786200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr17:59783400-59793200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr17:59783600-59787800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr17:59783800-59793600	Weak transcription	Fetal Intestine Large	intestine
20	chr17:59784000-59794600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:59784200-59786000	Weak transcription	Fetal Thymus	thymus
22	chr17:59784200-59793000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr17:59784400-59792800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr17:59784400-59793400	Weak transcription	NHEK	skin
25	chr17:59784400-59815200	Weak transcription	HMEC	breast
26	chr17:59784600-59788600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr17:59784800-59787200	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr17:59785000-59786600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr17:59785000-59787400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr17:59785000-59790400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr17:59785000-59793400	Weak transcription	K562	blood
32	chr17:59785200-59786200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr17:59785200-59794400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr17:59785400-59786600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr17:59785600-59786000	Weak transcription	GM12878-XiMat	blood
36	chr17:59785600-59786200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
37	chr17:59785600-59786400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr17:59785600-59786400	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr17:59785600-59787000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr17:59785600-59787200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr17:59785600-59787200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr17:59785600-59788000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr17:59785600-59788800	Strong transcription	Primary hematopoietic stem cells	blood
44	chr17:59785600-59791600	Strong transcription	Dnd41	blood
45	chr17:59785800-59786600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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