Variant report

Variant	rs62071871
Chromosome Location	chr17:59747712-59747713
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59745803..59748176-chr17:59757968..59759867,2	MCF-7	breast:
2	chr17:59746827..59750563-chr17:59755345..59757760,6	MCF-7	breast:
3	chr17:59746636..59748316-chr19:58705075..58706577,2	MCF-7	breast:
4	chr17:59746953..59749677-chr17:59767586..59769308,2	MCF-7	breast:
5	chr17:59489526..59491769-chr17:59745593..59747850,2	MCF-7	breast:
6	chr17:59746940..59748652-chr2:131112563..131114497,2	MCF-7	breast:
7	chr17:59746976..59749635-chr20:52581150..52583915,2	MCF-7	breast:
8	chr17:59744962..59748139-chr17:59753710..59756584,3	MCF-7	breast:
9	chr17:59728041..59729633-chr17:59745414..59747982,2	MCF-7	breast:
10	chr17:59738058..59738912-chr17:59747524..59748029,2	MCF-7	breast:
11	chr17:59744163..59748198-chr17:59775026..59778499,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000072135	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11079451	0.90[ASN][1000 genomes]
rs11079454	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11654606	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11867566	0.86[ASN][1000 genomes]
rs11871785	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12953192	0.83[AMR][1000 genomes]
rs2007931	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2106663	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2158005	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2159451	0.80[EUR][1000 genomes]
rs35090865	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35524448	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4988357	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56218811	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62071872	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6504065	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67223644	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7214703	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7219555	0.90[ASN][1000 genomes]
rs7220740	0.90[ASN][1000 genomes]
rs7222482	0.89[ASN][1000 genomes]
rs8064683	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9908115	0.90[ASN][1000 genomes]
rs9912366	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9915787	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9916777	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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