Variant report

Variant	rs62071872
Chromosome Location	chr17:59749089-59749090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59742754..59744544-chr17:59748255..59750511,3	MCF-7	breast:
2	chr17:59746827..59750563-chr17:59755345..59757760,6	MCF-7	breast:
3	chr17:59746953..59749677-chr17:59767586..59769308,2	MCF-7	breast:
4	chr17:59748189..59750624-chr17:59936832..59938980,2	MCF-7	breast:
5	chr17:59746976..59749635-chr20:52581150..52583915,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136492	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11079451	0.85[ASN][1000 genomes]
rs11079454	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11654606	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11867566	0.82[ASN][1000 genomes]
rs11871785	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12953192	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2007931	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2106663	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2158005	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35090865	0.80[ASN][1000 genomes]
rs35524448	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4988357	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56218811	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62071871	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6504065	0.82[AMR][1000 genomes]
rs67223644	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7214703	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7219555	0.85[ASN][1000 genomes]
rs7220740	0.85[ASN][1000 genomes]
rs7222482	0.87[ASN][1000 genomes]
rs8064683	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9908115	0.85[ASN][1000 genomes]
rs9912366	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9915787	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9916777	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9916780	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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