Variant report
| Variant | rs35090865 |
|---|---|
| Chromosome Location | chr17:59755338-59755339 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:59754587..59756738-chr17:59917430..59920080,2 | MCF-7 | breast: | |
| 2 | chr17:59744962..59748139-chr17:59753710..59756584,3 | MCF-7 | breast: | |
| 3 | chr17:59754561..59757250-chr17:59924100..59926334,2 | MCF-7 | breast: | |
| 4 | chr17:59754248..59756951-chr20:52209033..52210660,2 | MCF-7 | breast: | |
| 5 | chr17:59734711..59736213-chr17:59754506..59757344,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000171940 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11079454 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11654606 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11871785 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2007931 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2106663 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2158005 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs35524448 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4988357 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs56218811 | 0.86[EUR][1000 genomes] |
| rs62071871 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62071872 | 0.80[ASN][1000 genomes] |
| rs6504065 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs67223644 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7214703 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs8064683 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9912366 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9915787 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9916777 | 0.80[EUR][1000 genomes] |
| rs9916780 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3378293 | chr17:59744117-60124899 | ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 175 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:59751000-59777200 | Weak transcription | HepG2 | liver |
