Variant report
| Variant | rs9916777 |
|---|---|
| Chromosome Location | chr17:59749100-59749101 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:59742754..59744544-chr17:59748255..59750511,3 | MCF-7 | breast: | |
| 2 | chr17:59746827..59750563-chr17:59755345..59757760,6 | MCF-7 | breast: | |
| 3 | chr17:59746953..59749677-chr17:59767586..59769308,2 | MCF-7 | breast: | |
| 4 | chr17:59748189..59750624-chr17:59936832..59938980,2 | MCF-7 | breast: | |
| 5 | chr17:59746976..59749635-chr20:52581150..52583915,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000136492 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11079454 | 0.80[AMR][1000 genomes] |
| rs11871785 | 0.80[AMR][1000 genomes] |
| rs12953192 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2007931 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs35090865 | 0.80[EUR][1000 genomes] |
| rs35524448 | 0.80[AMR][1000 genomes] |
| rs4988357 | 0.80[AMR][1000 genomes] |
| rs62071871 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs62071872 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs67223644 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7214703 | 0.80[AMR][1000 genomes] |
| rs9915787 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9916780 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3378293 | chr17:59744117-60124899 | ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 175 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
