Variant report

Variant	rs2041006
Chromosome Location	chr7:103130805-103130806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103129355..103132565-chr7:103134493..103137999,5	K562	blood:
2	chr7:103130156..103132737-chr7:103133584..103135355,2	MCF-7	breast:
3	chr7:103129342..103131885-chr7:103164301..103166214,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10233848	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1978198	0.92[ASN][1000 genomes]
rs1978199	0.92[ASN][1000 genomes]
rs2190417	0.91[ASN][1000 genomes]
rs2190418	0.92[ASN][1000 genomes]
rs2528856	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2528859	0.92[EUR][1000 genomes]
rs2528869	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2528871	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2528876	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2711846	0.92[EUR][1000 genomes]
rs2711851	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2711881	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2906641	0.85[ASN][1000 genomes]
rs2906643	0.99[ASN][1000 genomes]
rs2965087	0.91[ASN][1000 genomes]
rs2965098	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3808043	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3808050	0.92[ASN][1000 genomes]
rs3808051	0.92[ASN][1000 genomes]
rs4727570	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6944123	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7783672	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7808296	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7808699	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103118400-103138000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:103122800-103141000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:103128000-103131400	Strong transcription	K562	blood
4	chr7:103129000-103131200	Strong transcription	HepG2	liver
5	chr7:103129000-103134800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:103129200-103131200	Strong transcription	Brain Anterior Caudate	brain
7	chr7:103129800-103133400	Weak transcription	Stomach Mucosa	stomach
8	chr7:103130000-103131200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:103130800-103131200	Strong transcription	Brain Hippocampus Middle	brain
10	chr7:103130800-103135800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:103130800-103155000	Weak transcription	Brain Substantia Nigra	brain
12	chr7:103130800-103163600	Weak transcription	Brain Inferior Temporal Lobe	brain

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