Variant report

Variant	rs3808043
Chromosome Location	chr7:103121109-103121110
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103120247..103122093-chr7:103122953..103125479,2	K562	blood:

Variant related genes	Relation type
ENSG00000222386	Chromatin interaction
ENSG00000189056	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10233848	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17132957	0.85[AFR][1000 genomes]
rs1978198	0.94[ASN][1000 genomes]
rs1978199	0.94[ASN][1000 genomes]
rs2041006	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2190417	0.93[ASN][1000 genomes]
rs2190418	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299331	0.94[JPT][hapmap]
rs2528856	0.89[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2528859	0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs2528862	0.87[JPT][hapmap]
rs2528869	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2528871	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2528876	0.90[ASN][1000 genomes]
rs2711846	0.83[CEU][hapmap];0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs2711851	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2711853	0.82[JPT][hapmap]
rs2711881	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2906641	0.87[ASN][1000 genomes]
rs2906643	0.96[ASN][1000 genomes]
rs2965087	0.80[CEU][hapmap];0.93[ASN][1000 genomes]
rs2965098	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3808050	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3808051	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3823992	0.89[AFR][1000 genomes]
rs4727570	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6944123	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs737373	0.89[AFR][1000 genomes]
rs7783672	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7808296	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7808699	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs971846	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103103600-103121400	Weak transcription	HepG2	liver
2	chr7:103115800-103121200	Weak transcription	K562	blood
3	chr7:103118400-103138000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:103120000-103122200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:103120000-103122200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:103120600-103122200	Weak transcription	Brain Anterior Caudate	brain

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