Variant report

Variant	rs7808296
Chromosome Location	chr7:103127620-103127621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr7:103127574-103128695	HepG2	liver:	n/a	chr7:103128632-103128644 chr7:103128018-103128030

Variant related genes	Relation type
RELN	TF binding region
RN7SKP86	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10233848	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1978198	0.90[ASN][1000 genomes]
rs1978199	0.90[ASN][1000 genomes]
rs2041006	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2190417	0.89[ASN][1000 genomes]
rs2190418	0.90[ASN][1000 genomes]
rs2528856	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2528859	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2528869	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2528871	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2528876	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2711846	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2711851	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2711881	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2906641	0.83[ASN][1000 genomes]
rs2906643	0.97[ASN][1000 genomes]
rs2965087	0.89[ASN][1000 genomes]
rs2965098	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808043	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3808050	0.90[ASN][1000 genomes]
rs3808051	0.90[ASN][1000 genomes]
rs4727570	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6944123	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7783672	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7808699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103118400-103138000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:103121800-103130800	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:103122400-103128000	Weak transcription	K562	blood
4	chr7:103122800-103128800	Weak transcription	Brain Substantia Nigra	brain
5	chr7:103122800-103141000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:103123600-103130000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:103123800-103130000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:103124200-103129200	Weak transcription	Brain Anterior Caudate	brain
9	chr7:103125200-103129000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:103127000-103128000	Weak transcription	HepG2	liver

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