Variant report
| Variant | rs2965087 |
|---|---|
| Chromosome Location | chr7:103111985-103111986 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103111727..103114201-chr7:103114561..103117547,2 | K562 | blood: | |
| 2 | chr7:103110722..103112367-chr7:103112649..103114305,2 | K562 | blood: | |
| 3 | chr7:103111982..103114637-chr7:103116557..103118162,2 | MCF-7 | breast: | |
| 4 | chr7:103084473..103086712-chr7:103110212..103112835,2 | K562 | blood: | |
| 5 | chr7:103106731..103109453-chr7:103110183..103113152,2 | MCF-7 | breast: | |
| 6 | chr7:103084396..103086712-chr7:103110212..103112835,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234715 | Chromatin interaction |
| ENSG00000170615 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10233848 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1978198 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1978199 | 0.99[ASN][1000 genomes] |
| rs2041006 | 0.91[ASN][1000 genomes] |
| rs2190417 | 0.97[ASN][1000 genomes] |
| rs2190418 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2528869 | 0.88[ASN][1000 genomes] |
| rs2528871 | 0.88[ASN][1000 genomes] |
| rs2528876 | 0.86[ASN][1000 genomes] |
| rs2711851 | 0.81[ASN][1000 genomes] |
| rs2711881 | 0.88[ASN][1000 genomes] |
| rs2906641 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2906643 | 0.92[ASN][1000 genomes] |
| rs2965098 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3808043 | 0.80[CEU][hapmap];0.93[ASN][1000 genomes] |
| rs3808050 | 0.99[ASN][1000 genomes] |
| rs3808051 | 0.99[ASN][1000 genomes] |
| rs4727570 | 0.88[ASN][1000 genomes] |
| rs6944123 | 0.88[ASN][1000 genomes] |
| rs7783672 | 0.82[ASN][1000 genomes] |
| rs7808296 | 0.89[ASN][1000 genomes] |
| rs7808699 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030446 | chr7:102932689-103221638 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103103600-103121400 | Weak transcription | HepG2 | liver |
