Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74099206..74103893-chr15:74105656..74108218,4	MCF-7	breast:
2	chr15:73923170..73926616-chr15:74097721..74100835,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11072443	0.84[AMR][1000 genomes]
rs11072447	0.86[JPT][hapmap]
rs11632129	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11639300	0.85[JPT][hapmap]
rs12148568	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12909231	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12910560	0.86[AMR][1000 genomes]
rs1377060	0.81[AMR][1000 genomes]
rs1478558	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17188111	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823718	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2045930	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2415231	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34222037	0.86[AMR][1000 genomes]
rs35814490	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4886412	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4886643	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4886644	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4886645	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4886646	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4886694	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4886698	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4886743	0.85[JPT][hapmap]
rs62007073	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7181093	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs746653	0.86[AMR][1000 genomes]
rs746654	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2045931	STOML1	cis	parietal	SCAN
rs2045931	PAQR5	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74088200-74100200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr15:74089600-74101800	Weak transcription	Spleen	Spleen
3	chr15:74096400-74103000	Weak transcription	Right Ventricle	heart
4	chr15:74096600-74101600	Weak transcription	Right Atrium	heart
5	chr15:74096600-74101800	Weak transcription	Left Ventricle	heart
6	chr15:74096600-74102200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:74097800-74101800	Weak transcription	Brain Angular Gyrus	brain
8	chr15:74097800-74102000	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:74097800-74110200	Weak transcription	Brain Germinal Matrix	brain
10	chr15:74098000-74101800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:74098000-74102200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:74099000-74101800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:74099200-74101800	Weak transcription	Fetal Brain Female	brain
14	chr15:74099400-74100200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:74099600-74101800	Weak transcription	Fetal Brain Male	brain
16	chr15:74100000-74101400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:74100000-74102600	Enhancers	HepG2	liver

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