Variant report

Variant	rs4886644
Chromosome Location	chr15:74103764-74103765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74099206..74103893-chr15:74105656..74108218,4	MCF-7	breast:
2	chr15:74096413..74099919-chr15:74101380..74103863,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11072443	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11072447	0.86[JPT][hapmap]
rs11632129	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11639300	0.85[JPT][hapmap]
rs12148568	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12909231	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12910560	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12914845	0.84[ASN][1000 genomes]
rs1377060	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1478558	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17188111	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1823718	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2045930	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2045931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2198295	0.87[ASN][1000 genomes]
rs2415231	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34222037	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35814490	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4886412	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886418	0.87[ASN][1000 genomes]
rs4886419	0.87[ASN][1000 genomes]
rs4886643	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886645	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886646	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4886694	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4886698	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4886743	0.86[JPT][hapmap]
rs62007073	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6495081	0.87[ASN][1000 genomes]
rs7181093	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs746653	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs746654	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8023709	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74097800-74110200	Weak transcription	Brain Germinal Matrix	brain
2	chr15:74100200-74105400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74102400-74104800	Weak transcription	Fetal Brain Female	brain
4	chr15:74102600-74105000	Weak transcription	Brain Angular Gyrus	brain
5	chr15:74102600-74105000	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:74103000-74104000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:74103000-74104200	Weak transcription	Fetal Brain Male	brain
8	chr15:74103000-74104800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:74103000-74105000	Weak transcription	Spleen	Spleen
10	chr15:74103200-74105000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:74103200-74105400	Weak transcription	Brain Cingulate Gyrus	brain

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