Variant report

Variant	rs4886643
Chromosome Location	chr15:74102450-74102451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74099206..74103893-chr15:74105656..74108218,4	MCF-7	breast:
2	chr15:74096413..74099919-chr15:74101380..74103863,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11072443	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11632129	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12148568	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12909231	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12910560	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12914845	0.84[ASN][1000 genomes]
rs1377060	0.87[ASN][1000 genomes]
rs1452385	0.80[EUR][1000 genomes]
rs1452386	0.80[EUR][1000 genomes]
rs1452387	0.80[EUR][1000 genomes]
rs1478558	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17188111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1823718	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2045930	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2045931	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2198295	0.87[ASN][1000 genomes]
rs2415231	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28379895	0.80[EUR][1000 genomes]
rs34222037	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35814490	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4338750	0.80[EUR][1000 genomes]
rs4366671	0.80[EUR][1000 genomes]
rs4457949	0.80[EUR][1000 genomes]
rs4633670	0.80[EUR][1000 genomes]
rs4886412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886418	0.87[ASN][1000 genomes]
rs4886419	0.87[ASN][1000 genomes]
rs4886644	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886645	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886646	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4886694	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4886698	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62007073	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6495081	0.87[ASN][1000 genomes]
rs71399764	0.81[AMR][1000 genomes]
rs7181093	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs746653	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs746654	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8023709	0.87[ASN][1000 genomes]
rs896593	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74096400-74103000	Weak transcription	Right Ventricle	heart
2	chr15:74097800-74110200	Weak transcription	Brain Germinal Matrix	brain
3	chr15:74100000-74102600	Enhancers	HepG2	liver
4	chr15:74100200-74105400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:74101400-74103200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:74101600-74103000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr15:74101800-74102600	Enhancers	Brain Angular Gyrus	brain
8	chr15:74101800-74103000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:74101800-74103000	Enhancers	Fetal Brain Male	brain
10	chr15:74101800-74103000	Enhancers	Left Ventricle	heart
11	chr15:74101800-74103000	Enhancers	Spleen	Spleen
12	chr15:74102000-74102600	Enhancers	Brain Hippocampus Middle	brain
13	chr15:74102000-74102600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:74102000-74103000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr15:74102000-74103000	Enhancers	Fetal Muscle Trunk	muscle
16	chr15:74102200-74102800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:74102200-74102800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:74102200-74102800	Weak transcription	Right Atrium	heart
19	chr15:74102200-74103000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:74102200-74103200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:74102200-74103200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:74102200-74103200	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:74102400-74102600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
24	chr15:74102400-74102800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:74102400-74103000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:74102400-74103000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr15:74102400-74103000	Bivalent Enhancer	NHEK	skin
28	chr15:74102400-74104800	Weak transcription	Fetal Brain Female	brain

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