Variant report
| Variant | rs12914845 |
|---|---|
| Chromosome Location | chr15:74112463-74112464 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11072443 | 0.84[ASN][1000 genomes] |
| rs11632129 | 0.87[ASN][1000 genomes] |
| rs12148568 | 0.81[ASN][1000 genomes] |
| rs12909231 | 0.87[ASN][1000 genomes] |
| rs12910560 | 0.91[ASN][1000 genomes] |
| rs1377060 | 0.97[ASN][1000 genomes] |
| rs1478558 | 0.97[ASN][1000 genomes] |
| rs16958333 | 0.80[AFR][1000 genomes] |
| rs16958334 | 0.80[AFR][1000 genomes] |
| rs1823718 | 0.87[ASN][1000 genomes] |
| rs1901571 | 0.87[ASN][1000 genomes] |
| rs2198295 | 0.97[ASN][1000 genomes] |
| rs2415231 | 0.97[ASN][1000 genomes] |
| rs34222037 | 0.94[ASN][1000 genomes] |
| rs35127778 | 0.80[AFR][1000 genomes] |
| rs35814490 | 0.97[ASN][1000 genomes] |
| rs4886412 | 0.91[ASN][1000 genomes] |
| rs4886418 | 0.97[ASN][1000 genomes] |
| rs4886419 | 0.97[ASN][1000 genomes] |
| rs4886643 | 0.84[ASN][1000 genomes] |
| rs4886644 | 0.84[ASN][1000 genomes] |
| rs4886645 | 0.91[ASN][1000 genomes] |
| rs4886646 | 0.88[ASN][1000 genomes] |
| rs4886694 | 0.87[ASN][1000 genomes] |
| rs4886698 | 0.87[ASN][1000 genomes] |
| rs58807392 | 0.86[AFR][1000 genomes] |
| rs6495081 | 0.97[ASN][1000 genomes] |
| rs71399764 | 0.84[ASN][1000 genomes] |
| rs7181093 | 0.97[ASN][1000 genomes] |
| rs746653 | 0.91[ASN][1000 genomes] |
| rs746654 | 0.91[ASN][1000 genomes] |
| rs8023709 | 0.97[ASN][1000 genomes] |
| rs999743 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043335 | chr15:74078689-74241186 | Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:74111000-74114200 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr15:74111000-74119200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
