Variant report

Variant	rs58807392
Chromosome Location	chr15:74119319-74119320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12914845	0.86[AFR][1000 genomes]
rs16958333	0.93[AFR][1000 genomes]
rs16958334	0.93[AFR][1000 genomes]
rs35127778	0.93[AFR][1000 genomes]
rs4886425	0.99[ASN][1000 genomes]
rs58492359	0.86[AFR][1000 genomes]
rs72743364	0.88[EUR][1000 genomes]
rs72743368	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72743374	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72743376	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72743377	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743379	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72743380	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72743388	0.91[EUR][1000 genomes]
rs72743401	0.86[EUR][1000 genomes]
rs8030745	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs999743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74118400-74120000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:74118800-74119800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:74118800-74119800	Enhancers	NHEK	skin
4	chr15:74119200-74119600	Enhancers	HMEC	breast
5	chr15:74119200-74119800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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