Variant report

Variant	rs72743368
Chromosome Location	chr15:74110523-74110524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12438304	0.81[EUR][1000 genomes]
rs16958300	0.81[EUR][1000 genomes]
rs58807392	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72743364	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72743374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743377	0.95[EUR][1000 genomes]
rs72743379	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743388	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72743401	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8030745	0.86[EUR][1000 genomes]
rs999743	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74109400-74111600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr15:74109600-74111600	Enhancers	Fetal Muscle Leg	muscle
3	chr15:74109800-74111000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:74110000-74110800	Bivalent Enhancer	Placenta	Placenta
5	chr15:74110000-74111200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr15:74110200-74111000	Enhancers	Fetal Brain Female	brain
7	chr15:74110200-74111000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
8	chr15:74110200-74111200	Enhancers	Brain Germinal Matrix	brain
9	chr15:74110400-74110800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr15:74110400-74111000	Enhancers	Fetal Brain Male	brain
11	chr15:74110400-74111200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:74110400-74111200	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links