Variant report

Variant	rs72743401
Chromosome Location	chr15:74136346-74136347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58807392	0.86[EUR][1000 genomes]
rs72743364	0.81[EUR][1000 genomes]
rs72743368	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72743374	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72743376	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72743377	0.85[EUR][1000 genomes]
rs72743379	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72743380	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72743388	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8030745	0.93[EUR][1000 genomes]
rs999743	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74131800-74136800	Weak transcription	Pancreas	Pancrea
2	chr15:74132400-74146600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74134400-74140800	Weak transcription	Fetal Brain Male	brain
4	chr15:74134600-74137000	Weak transcription	Right Atrium	heart
5	chr15:74135000-74137000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:74135000-74137000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:74135200-74136800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:74135200-74136800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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