Variant report

Variant	rs8030745
Chromosome Location	chr15:74133091-74133092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16958297	0.86[YRI][hapmap]
rs16958379	0.86[AFR][1000 genomes]
rs16958415	0.85[JPT][hapmap]
rs2290346	0.85[JPT][hapmap]
rs4886425	0.98[ASN][1000 genomes]
rs58807392	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170291	0.85[JPT][hapmap]
rs72743364	0.81[EUR][1000 genomes]
rs72743368	0.86[EUR][1000 genomes]
rs72743374	0.87[EUR][1000 genomes]
rs72743376	0.87[EUR][1000 genomes]
rs72743377	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72743379	0.87[EUR][1000 genomes]
rs72743380	0.87[EUR][1000 genomes]
rs72743388	0.93[EUR][1000 genomes]
rs72743401	0.93[EUR][1000 genomes]
rs8030364	0.93[AFR][1000 genomes]
rs999743	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74129600-74133200	Weak transcription	Spleen	Spleen
2	chr15:74131800-74136800	Weak transcription	Pancreas	Pancrea
3	chr15:74132200-74133800	Weak transcription	Right Atrium	heart
4	chr15:74132200-74134000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:74132400-74134200	Weak transcription	Fetal Brain Female	brain
6	chr15:74132400-74146600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:74132800-74134000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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