Variant report

Variant	rs8023709
Chromosome Location	chr15:74116372-74116373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1031407	0.80[ASN][1000 genomes]
rs11072443	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11072447	0.80[ASN][1000 genomes]
rs11632129	0.90[ASN][1000 genomes]
rs12148568	0.84[ASN][1000 genomes]
rs12909231	0.90[ASN][1000 genomes]
rs12910560	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12914845	0.97[ASN][1000 genomes]
rs12915472	0.80[ASN][1000 genomes]
rs1377060	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1478558	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1823718	0.90[ASN][1000 genomes]
rs1901571	0.90[ASN][1000 genomes]
rs2198295	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415231	1.00[ASN][1000 genomes]
rs34222037	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35814490	1.00[ASN][1000 genomes]
rs4886412	0.94[ASN][1000 genomes]
rs4886418	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886419	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886643	0.87[ASN][1000 genomes]
rs4886644	0.87[ASN][1000 genomes]
rs4886645	0.94[ASN][1000 genomes]
rs4886646	0.90[ASN][1000 genomes]
rs4886694	0.90[ASN][1000 genomes]
rs4886698	0.90[ASN][1000 genomes]
rs6495081	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71399764	0.87[ASN][1000 genomes]
rs7181093	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs746653	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs746654	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74111000-74119200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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