Variant report

Variant	rs896593
Chromosome Location	chr15:74150107-74150108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1031407	0.85[EUR][1000 genomes]
rs11632129	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12909231	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12915472	0.82[EUR][1000 genomes]
rs1452385	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1452386	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1452387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1478558	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17188111	0.80[EUR][1000 genomes]
rs1823718	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1901571	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2167649	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2415231	0.86[EUR][1000 genomes]
rs28379895	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35814490	0.86[EUR][1000 genomes]
rs4338750	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4366671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4457949	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4633670	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4886412	0.81[EUR][1000 genomes]
rs4886643	0.80[EUR][1000 genomes]
rs4886694	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4886698	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62007073	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71399764	0.85[EUR][1000 genomes]
rs7181093	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs896600	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74148400-74150400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:74149400-74154400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:74149400-74154600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:74149600-74154400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:74149600-74158600	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links