Variant report

Variant	rs2049832
Chromosome Location	chr14:80289502-80289503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10162466	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap]
rs1159039	0.83[JPT][hapmap]
rs2049831	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2223033	0.83[JPT][hapmap]
rs2242642	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2242643	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs2242644	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2242645	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2242646	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2242647	0.82[JPT][hapmap]
rs2242649	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2293822	0.92[CEU][hapmap]
rs2293825	1.00[CHB][hapmap];0.96[JPT][hapmap]
rs2293826	0.91[CHB][hapmap]
rs2293829	0.91[CHB][hapmap]
rs2293830	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3412265	chr14:80289484-80290457	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80286600-80291000	Enhancers	Brain Substantia Nigra	brain
2	chr14:80286800-80289600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr14:80287000-80289600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:80287600-80290000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:80287600-80291600	Weak transcription	Fetal Lung	lung
6	chr14:80287800-80290200	Weak transcription	Fetal Kidney	kidney
7	chr14:80288000-80296000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:80288200-80289600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:80288800-80290200	Weak transcription	Brain Anterior Caudate	brain
10	chr14:80289200-80291600	Enhancers	Brain Hippocampus Middle	brain
11	chr14:80289400-80290200	Weak transcription	Brain Angular Gyrus	brain
12	chr14:80289400-80290800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:80289400-80291600	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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