Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1003814	0.89[YRI][hapmap]
rs10144071	0.83[ASN][1000 genomes]
rs10162466	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12589026	0.83[ASN][1000 genomes]
rs12590855	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17764746	0.94[YRI][hapmap]
rs2049831	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs2049832	0.91[CHB][hapmap]
rs2242642	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs2242643	0.95[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2242644	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs2242645	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs2242646	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs2242649	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2293818	0.83[ASN][1000 genomes]
rs2293819	0.83[ASN][1000 genomes]
rs2293820	0.83[ASN][1000 genomes]
rs2293821	0.83[ASN][1000 genomes]
rs2293822	0.83[ASN][1000 genomes]
rs2293823	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs2293825	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs2293829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2293830	0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4486813	0.83[ASN][1000 genomes]
rs4903880	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80292800-80302200	Weak transcription	Brain Angular Gyrus	brain
2	chr14:80297800-80300400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:80298000-80302000	Weak transcription	Brain Substantia Nigra	brain
4	chr14:80298400-80300200	Weak transcription	Brain Germinal Matrix	brain
5	chr14:80298600-80302400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:80298600-80302400	Weak transcription	NHLF	lung
7	chr14:80299000-80300000	Weak transcription	Brain Anterior Caudate	brain
8	chr14:80299000-80300000	Weak transcription	Fetal Lung	lung
9	chr14:80299000-80300200	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:80299000-80302200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:80299000-80302400	Weak transcription	Brain Cingulate Gyrus	brain

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