Variant report

Variant	rs2293825
Chromosome Location	chr14:80296475-80296476
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10144071	0.99[ASN][1000 genomes]
rs10162466	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1159039	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11623525	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11625881	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12589026	1.00[ASN][1000 genomes]
rs12590855	0.85[ASN][1000 genomes]
rs12895492	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2049831	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs2049832	1.00[CHB][hapmap];0.96[JPT][hapmap]
rs2205217	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2223033	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2242642	1.00[CHB][hapmap];0.96[JPT][hapmap];0.99[ASN][1000 genomes]
rs2242643	0.95[CHB][hapmap];0.87[JPT][hapmap];0.99[ASN][1000 genomes]
rs2242644	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs2242645	1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs2242646	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs2242647	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2242649	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2280799	0.95[ASN][1000 genomes]
rs2293818	0.99[ASN][1000 genomes]
rs2293819	0.99[ASN][1000 genomes]
rs2293820	0.99[ASN][1000 genomes]
rs2293821	0.99[ASN][1000 genomes]
rs2293822	0.99[ASN][1000 genomes]
rs2293824	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2293826	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs2293829	0.91[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2293830	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs35152678	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4486813	0.99[ASN][1000 genomes]
rs4903880	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80292000-80297200	Weak transcription	Fetal Lung	lung
2	chr14:80292800-80302200	Weak transcription	Brain Angular Gyrus	brain
3	chr14:80293600-80297000	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:80295600-80296600	Enhancers	Brain Substantia Nigra	brain
5	chr14:80295800-80296600	Enhancers	Brain Germinal Matrix	brain
6	chr14:80295800-80296600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr14:80296000-80297200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:80296200-80296800	Enhancers	Brain Cingulate Gyrus	brain
9	chr14:80296200-80297000	Enhancers	Left Ventricle	heart
10	chr14:80296400-80298600	Weak transcription	Brain Anterior Caudate	brain

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