Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1003814	0.89[YRI][hapmap]
rs10144071	0.84[ASN][1000 genomes]
rs10162466	0.91[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs12589026	0.85[ASN][1000 genomes]
rs12590855	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17764746	0.92[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs2049831	0.91[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs2049832	0.91[CHB][hapmap]
rs2242642	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs2242643	0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2242644	0.91[CHB][hapmap];0.86[CHD][hapmap];0.84[ASN][1000 genomes]
rs2242645	0.90[CHB][hapmap];0.86[CHD][hapmap];0.84[ASN][1000 genomes]
rs2242646	0.91[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs2242649	0.91[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2280799	0.81[ASN][1000 genomes]
rs2293818	0.84[ASN][1000 genomes]
rs2293819	0.84[ASN][1000 genomes]
rs2293820	0.84[ASN][1000 genomes]
rs2293821	0.84[ASN][1000 genomes]
rs2293822	0.84[ASN][1000 genomes]
rs2293823	0.89[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs2293825	0.91[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2293826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2293830	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4486813	0.84[ASN][1000 genomes]
rs4903880	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2293829	TMEM63C	cis	cerebellum	SCAN
rs2293829	FOS	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80292800-80302200	Weak transcription	Brain Angular Gyrus	brain
2	chr14:80298000-80302000	Weak transcription	Brain Substantia Nigra	brain
3	chr14:80298600-80302400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:80298600-80302400	Weak transcription	NHLF	lung
5	chr14:80299000-80302200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:80299000-80302400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:80300400-80302000	Weak transcription	Brain Germinal Matrix	brain
8	chr14:80300600-80301200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:80300600-80302200	Weak transcription	Brain Hippocampus Middle	brain

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