Variant report

Variant	rs2052511
Chromosome Location	chr5:164618886-164618887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10076942	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11743682	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11750392	0.92[ASN][1000 genomes]
rs13164844	1.00[ASN][1000 genomes]
rs13175931	1.00[ASN][1000 genomes]
rs1368423	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1473186	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17332900	0.92[ASN][1000 genomes]
rs2112641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs253536	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2861088	0.88[EUR][1000 genomes]
rs2861089	0.88[EUR][1000 genomes]
rs2861093	0.83[EUR][1000 genomes]
rs34809058	1.00[ASN][1000 genomes]
rs35322903	1.00[ASN][1000 genomes]
rs35839763	1.00[ASN][1000 genomes]
rs36070089	0.92[ASN][1000 genomes]
rs36113677	1.00[ASN][1000 genomes]
rs4283809	0.89[EUR][1000 genomes]
rs4552632	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4563646	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6869965	0.83[EUR][1000 genomes]
rs6884321	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7444721	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7447465	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs766120	0.87[EUR][1000 genomes]
rs766122	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9314053	0.89[EUR][1000 genomes]
rs982305	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164618000-164619800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:164618000-164619800	Weak transcription	Monocytes-CD14+_RO01746	blood

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