Variant report

Variant	rs2861089
Chromosome Location	chr5:164557954-164557955
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10076942	0.88[EUR][1000 genomes]
rs11135348	0.89[EUR][1000 genomes]
rs11743682	0.81[EUR][1000 genomes]
rs1368423	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs1473186	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052511	0.88[EUR][1000 genomes]
rs2112641	0.88[EUR][1000 genomes]
rs253536	0.93[EUR][1000 genomes]
rs2861088	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861093	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35142388	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35660522	0.87[EUR][1000 genomes]
rs4283809	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4382188	0.87[EUR][1000 genomes]
rs4489083	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4552632	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4563646	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4588611	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4591770	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6869716	0.88[EUR][1000 genomes]
rs6869965	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6896670	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7444721	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7447465	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs766120	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs766122	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9314053	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs982305	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164556800-164558000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:164556800-164558200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:164557400-164558200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:164557800-164562200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:164557800-164562600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:164557800-164565000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:164557800-164570800	Weak transcription	H1 Cell Line	embryonic stem cell

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