Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11135348	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1473186	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs253536	0.82[EUR][1000 genomes]
rs2861088	0.88[EUR][1000 genomes]
rs2861089	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2861093	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35142388	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35660522	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4283809	0.86[EUR][1000 genomes]
rs4382188	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4489083	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4552632	0.86[EUR][1000 genomes]
rs4563646	0.87[EUR][1000 genomes]
rs4588611	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6869716	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869965	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6896670	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7444721	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7447465	0.87[EUR][1000 genomes]
rs766120	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs766122	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7737487	0.88[EUR][1000 genomes]
rs9314053	0.86[EUR][1000 genomes]
rs982305	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv883092	chr5:164443094-164529549	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1031772	chr5:164451602-164512911	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164510200-164512600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:164510400-164514200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:164511800-164513400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:164511800-164513600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:164512000-164512400	Weak transcription	Brain Germinal Matrix	brain
6	chr5:164512000-164513600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:164512000-164515800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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