Variant report

Variant	rs7447465
Chromosome Location	chr5:164566362-164566363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10076942	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11135348	0.87[EUR][1000 genomes]
rs11743682	0.83[EUR][1000 genomes]
rs1368423	0.88[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs1473186	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2052511	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2112641	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs253536	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2861088	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2861089	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2861093	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35142388	0.87[EUR][1000 genomes]
rs35660522	0.85[EUR][1000 genomes]
rs4283809	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4382188	0.87[EUR][1000 genomes]
rs4489083	0.85[EUR][1000 genomes]
rs4552632	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4563646	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4588611	0.86[EUR][1000 genomes]
rs4591770	0.87[EUR][1000 genomes]
rs6869716	0.87[EUR][1000 genomes]
rs6869965	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6884321	0.83[AMR][1000 genomes]
rs6896670	0.87[EUR][1000 genomes]
rs7444721	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs766120	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs766122	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9314053	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs982305	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164557800-164570800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:164564000-164568400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:164564400-164566800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:164564800-164567600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:164564800-164568000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:164565000-164567200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:164565000-164567400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:164565200-164570800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:164565800-164567600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:164565800-164568400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:164565800-164570600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:164565800-164570600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:164565800-164574800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:164566000-164566400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr5:164566000-164567400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr5:164566200-164566400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr5:164566200-164567200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links