Variant report

Variant	rs6869965
Chromosome Location	chr5:164540349-164540350
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10036020	0.86[AFR][1000 genomes]
rs10076942	0.83[EUR][1000 genomes]
rs11135348	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11743682	0.80[AMR][1000 genomes]
rs1473186	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2052511	0.83[EUR][1000 genomes]
rs2112641	0.83[EUR][1000 genomes]
rs253536	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2861088	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2861089	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2861093	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35142388	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35660522	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4283809	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4382188	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4489083	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4552632	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4563646	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4588611	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4591770	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6869716	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6896670	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7444721	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7447465	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs766120	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs766122	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7737487	0.82[EUR][1000 genomes]
rs9314053	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs982305	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164540200-164540600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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