Variant report

Variant	rs2054120
Chromosome Location	chr2:63911816-63911817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10175674	0.82[JPT][hapmap]
rs1109027	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12463603	0.82[EUR][1000 genomes]
rs12472865	0.83[EUR][1000 genomes]
rs17554675	0.84[AMR][1000 genomes]
rs17618045	0.82[EUR][1000 genomes]
rs17619012	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17619354	0.81[AMR][1000 genomes]
rs4075010	0.84[EUR][1000 genomes]
rs4671070	0.82[ASN][1000 genomes]
rs6710230	0.82[JPT][hapmap]
rs72806056	0.86[EUR][1000 genomes]
rs72806087	0.84[ASN][1000 genomes]
rs72808216	0.84[EUR][1000 genomes]
rs72808218	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv961781	chr2:63911442-63916913	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63908800-63923400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:63909200-63925600	Weak transcription	Psoas Muscle	Psoas
3	chr2:63911600-63912200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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