Variant report

Variant	rs17554675
Chromosome Location	chr2:63919971-63919972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63918680..63921430-chr2:63924139..63927284,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10187024	0.91[ASN][1000 genomes]
rs10200146	0.87[JPT][hapmap]
rs10209140	0.86[JPT][hapmap]
rs10496102	0.95[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1109027	0.80[CEU][hapmap]
rs12470478	0.90[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs12472865	0.80[CEU][hapmap]
rs12476015	0.83[EUR][1000 genomes]
rs12988017	0.80[CEU][hapmap]
rs12993544	0.80[CEU][hapmap]
rs13405855	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13417333	0.91[ASN][1000 genomes]
rs17617855	0.80[EUR][1000 genomes]
rs17618045	0.80[CEU][hapmap]
rs17618390	0.82[CEU][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs17619354	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054120	0.84[AMR][1000 genomes]
rs2168274	0.81[JPT][hapmap]
rs2168275	0.91[ASN][1000 genomes]
rs2278718	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2287361	0.80[CEU][hapmap]
rs2422005	0.91[ASN][1000 genomes]
rs36099158	0.80[CEU][hapmap]
rs4567921	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4671072	0.80[CEU][hapmap]
rs4671522	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4671527	0.94[ASN][1000 genomes]
rs6546020	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs6546021	0.91[ASN][1000 genomes]
rs6546023	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722981	0.95[ASN][1000 genomes]
rs6723088	0.95[ASN][1000 genomes]
rs6723875	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72806004	0.81[EUR][1000 genomes]
rs72806055	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72806058	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72806082	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72806089	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72806095	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63908800-63923400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:63909200-63925600	Weak transcription	Psoas Muscle	Psoas
3	chr2:63919600-63923000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:63919800-63921000	Weak transcription	Liver	Liver
5	chr2:63919800-63925400	Weak transcription	A549	lung

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