Variant report

Variant	rs6723088
Chromosome Location	chr2:63916826-63916827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10187024	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10200146	0.87[JPT][hapmap]
rs10209140	0.92[CEU][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10496102	0.93[JPT][hapmap]
rs12470478	0.82[CHD][hapmap];0.93[JPT][hapmap]
rs13405855	1.00[ASN][1000 genomes]
rs13417333	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17554675	0.95[ASN][1000 genomes]
rs17618390	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17619354	0.95[ASN][1000 genomes]
rs2168274	0.80[JPT][hapmap]
rs2168275	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2278718	1.00[JPT][hapmap]
rs2422005	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4567921	0.85[ASN][1000 genomes]
rs4671522	0.85[ASN][1000 genomes]
rs4671527	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6546020	0.84[CHB][hapmap]
rs6546021	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6546023	0.95[ASN][1000 genomes]
rs6722981	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6723875	0.94[ASN][1000 genomes]
rs72806055	0.83[ASN][1000 genomes]
rs72806058	0.83[ASN][1000 genomes]
rs72806082	0.87[ASN][1000 genomes]
rs72806089	0.86[ASN][1000 genomes]
rs72806095	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv961781	chr2:63911442-63916913	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6723088	UGP2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63908800-63923400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:63909200-63925600	Weak transcription	Psoas Muscle	Psoas

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