Variant report
| Variant | rs6722981 |
|---|---|
| Chromosome Location | chr2:63916722-63916723 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10187024 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10200146 | 0.87[JPT][hapmap] |
| rs10209140 | 0.85[CEU][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10496102 | 0.86[JPT][hapmap] |
| rs12470478 | 0.93[JPT][hapmap] |
| rs13405855 | 1.00[ASN][1000 genomes] |
| rs13417333 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17554675 | 0.95[ASN][1000 genomes] |
| rs17618390 | 0.93[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs17619354 | 0.95[ASN][1000 genomes] |
| rs2168274 | 0.81[JPT][hapmap] |
| rs2168275 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2278718 | 1.00[JPT][hapmap] |
| rs2422005 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4567921 | 0.85[ASN][1000 genomes] |
| rs4671522 | 0.85[ASN][1000 genomes] |
| rs4671527 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6546021 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6546023 | 0.95[ASN][1000 genomes] |
| rs6723088 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6723875 | 0.94[ASN][1000 genomes] |
| rs72806055 | 0.83[ASN][1000 genomes] |
| rs72806058 | 0.83[ASN][1000 genomes] |
| rs72806082 | 0.87[ASN][1000 genomes] |
| rs72806089 | 0.86[ASN][1000 genomes] |
| rs72806095 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834242 | chr2:63891249-64045617 | Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv961781 | chr2:63911442-63916913 | Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:63908800-63923400 | Weak transcription | Adipose Nuclei | Adipose |
| 2 | chr2:63909200-63925600 | Weak transcription | Psoas Muscle | Psoas |
