Variant report

Variant	rs4567921
Chromosome Location	chr2:63847114-63847115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10187024	0.81[ASN][1000 genomes]
rs10496102	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1109027	0.86[CEU][hapmap]
rs12464471	0.86[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12470478	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12472865	0.86[CEU][hapmap]
rs12476015	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13405855	0.85[ASN][1000 genomes]
rs13417333	0.81[ASN][1000 genomes]
rs17554675	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17617855	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17618045	0.86[CEU][hapmap]
rs17618390	0.89[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17619354	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2168275	0.81[ASN][1000 genomes]
rs2278718	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2422005	0.81[ASN][1000 genomes]
rs4671062	0.84[EUR][1000 genomes]
rs4671522	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671527	0.84[ASN][1000 genomes]
rs6546021	0.81[ASN][1000 genomes]
rs6546023	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6722981	0.85[ASN][1000 genomes]
rs6723088	0.85[ASN][1000 genomes]
rs6723875	0.81[ASN][1000 genomes]
rs72806004	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72806010	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806027	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72806055	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72806056	0.81[EUR][1000 genomes]
rs72806058	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72806082	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72806089	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72806095	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72821628	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72821630	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72821631	0.85[EUR][1000 genomes]
rs72821632	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv963239	chr2:63846496-63877130	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63843400-63847800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:63844400-63865600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:63844800-63866200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:63845200-63847200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:63846200-63847400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:63846400-63848400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:63846800-63847200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr2:63846800-63847800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr2:63846800-63848200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr2:63846800-63848200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:63847000-63847800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:63847000-63848000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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