Variant report

Variant	rs72821631
Chromosome Location	chr2:63700164-63700165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10496102	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1109027	0.83[EUR][1000 genomes]
rs12463603	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12464471	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12470478	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12472865	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12476015	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12478365	0.87[ASN][1000 genomes]
rs17617855	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17618045	0.82[EUR][1000 genomes]
rs2278718	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4567921	0.85[EUR][1000 genomes]
rs4671062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4671522	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56219461	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806004	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72806010	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72806027	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72806055	0.83[EUR][1000 genomes]
rs72806056	0.80[EUR][1000 genomes]
rs72806058	0.86[EUR][1000 genomes]
rs72806082	0.82[EUR][1000 genomes]
rs72806089	0.80[EUR][1000 genomes]
rs72821624	0.99[ASN][1000 genomes]
rs72821628	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821630	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv874235	chr2:63622470-63709708	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63666600-63726800	Weak transcription	Gastric	stomach
2	chr2:63675800-63712000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:63680600-63705800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:63681600-63717800	Weak transcription	Aorta	Aorta
5	chr2:63682400-63717600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:63683400-63712800	Weak transcription	Fetal Thymus	thymus
7	chr2:63686000-63704600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:63686600-63706800	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:63687400-63701000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:63687600-63713200	Weak transcription	Fetal Kidney	kidney
11	chr2:63688600-63704600	Weak transcription	Right Ventricle	heart
12	chr2:63688600-63705000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:63688600-63727800	Weak transcription	Primary B cells from cord blood	blood
14	chr2:63688800-63700600	Weak transcription	Brain Hippocampus Middle	brain
15	chr2:63688800-63701800	Weak transcription	Fetal Lung	lung
16	chr2:63688800-63711000	Weak transcription	Brain Anterior Caudate	brain
17	chr2:63688800-63723000	Weak transcription	Liver	Liver
18	chr2:63689000-63700600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:63689000-63712000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:63690200-63713600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr2:63690400-63704800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:63690600-63704600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr2:63690600-63733000	Weak transcription	Dnd41	blood
24	chr2:63691000-63724400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr2:63691400-63728000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr2:63691600-63719800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr2:63694600-63713400	Weak transcription	NHDF-Ad	bronchial
28	chr2:63695800-63713200	Weak transcription	HSMM	muscle
29	chr2:63696200-63708800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:63697600-63711000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr2:63697800-63705200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr2:63698600-63706800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr2:63698600-63711000	Weak transcription	Adipose Nuclei	Adipose
34	chr2:63698600-63726800	Weak transcription	Left Ventricle	heart
35	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
36	chr2:63698800-63701800	Weak transcription	Ovary	ovary
37	chr2:63699000-63707000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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