Variant report

Variant	rs10496102
Chromosome Location	chr2:63731239-63731240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10164844	0.81[JPT][hapmap]
rs10171190	0.82[JPT][hapmap]
rs10200146	0.81[JPT][hapmap]
rs10209490	0.82[JPT][hapmap]
rs1022351	0.87[JPT][hapmap]
rs1022353	0.82[JPT][hapmap]
rs1109027	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs12464471	0.84[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12466601	1.00[YRI][hapmap]
rs12470478	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12472865	0.84[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs12476015	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12478365	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12478442	1.00[YRI][hapmap]
rs13409031	0.82[JPT][hapmap]
rs13422170	0.82[JPT][hapmap]
rs17554675	0.81[EUR][1000 genomes]
rs17617855	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17618045	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17618390	0.87[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17619354	0.81[EUR][1000 genomes]
rs2138791	0.82[JPT][hapmap]
rs2178678	0.82[JPT][hapmap]
rs2278718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2421891	0.93[JPT][hapmap]
rs2421892	0.87[JPT][hapmap]
rs2422008	0.86[JPT][hapmap]
rs4567921	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4671061	0.82[JPT][hapmap]
rs4671062	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4671522	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56219461	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546023	0.81[EUR][1000 genomes]
rs6735907	0.82[JPT][hapmap]
rs72806004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806010	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72806027	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72806055	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806058	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806082	0.90[EUR][1000 genomes]
rs72806089	0.88[EUR][1000 genomes]
rs72806095	0.81[EUR][1000 genomes]
rs72821624	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72821628	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821630	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821631	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821632	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63690600-63733000	Weak transcription	Dnd41	blood
2	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
3	chr2:63716800-63733400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:63724600-63735200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:63726200-63731600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:63727000-63733600	Weak transcription	Psoas Muscle	Psoas
7	chr2:63730200-63731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:63730400-63731600	Enhancers	Fetal Heart	heart
9	chr2:63730600-63731600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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