Variant report

Variant	rs72806004
Chromosome Location	chr2:63729432-63729433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63728282..63730215-chr2:63731772..63734074,2	MCF-7	breast:
2	chr2:63724967..63727086-chr2:63728677..63731026,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10496102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12464471	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12470478	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12472865	0.82[EUR][1000 genomes]
rs12476015	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12478365	0.83[ASN][1000 genomes]
rs17554675	0.81[EUR][1000 genomes]
rs17617855	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17618390	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17619354	0.81[EUR][1000 genomes]
rs2278718	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4567921	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4671062	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4671522	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56219461	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546023	0.81[EUR][1000 genomes]
rs72806010	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72806027	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72806055	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806058	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806082	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72806089	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72806095	0.81[EUR][1000 genomes]
rs72821624	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72821628	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821630	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821631	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821632	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63690600-63733000	Weak transcription	Dnd41	blood
2	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
3	chr2:63716800-63733400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:63718000-63729600	Weak transcription	Aorta	Aorta
5	chr2:63724600-63735200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:63726200-63731600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:63727000-63733600	Weak transcription	Psoas Muscle	Psoas
8	chr2:63727200-63730000	Weak transcription	Left Ventricle	heart
9	chr2:63728000-63730400	Weak transcription	Fetal Heart	heart

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