Variant report

Variant	rs72806027
Chromosome Location	chr2:63789049-63789050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10496102	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1109027	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12463603	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12464471	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12470478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12472865	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12476015	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17617855	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17618045	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17618390	0.89[ASN][1000 genomes]
rs2278718	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4567921	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4671062	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4671522	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56219461	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72806004	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72806010	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72806055	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72806056	0.82[EUR][1000 genomes]
rs72806058	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72806082	0.86[EUR][1000 genomes]
rs72806089	0.84[EUR][1000 genomes]
rs72821624	0.84[ASN][1000 genomes]
rs72821628	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72821630	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72821631	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72821632	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63777400-63806800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:63778800-63794000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:63780200-63814800	Weak transcription	Psoas Muscle	Psoas
4	chr2:63780800-63791800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:63780800-63792200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:63781000-63793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:63781000-63804000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:63781200-63790000	Weak transcription	Right Ventricle	heart
9	chr2:63782600-63793400	Weak transcription	Lung	lung
10	chr2:63783400-63798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:63783600-63790600	Weak transcription	Liver	Liver
12	chr2:63783600-63793800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr2:63783800-63790000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:63785800-63789800	Weak transcription	Fetal Heart	heart
15	chr2:63787000-63793800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr2:63787400-63790800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr2:63787600-63793200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:63788600-63790200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:63788800-63789200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
20	chr2:63788800-63789400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:63788800-63789400	ZNF genes & repeats	Primary T cells from cord blood	blood
22	chr2:63789000-63789200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:63789000-63789200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
24	chr2:63789000-63789400	ZNF genes & repeats	Adipose Nuclei	Adipose
25	chr2:63789000-63793200	Weak transcription	Primary B cells from cord blood	blood
26	chr2:63789000-63808200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:63789000-63808200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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