Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10187024	1.00[ASN][1000 genomes]
rs10496102	0.90[CEU][hapmap]
rs12470478	0.85[CEU][hapmap];0.87[CHD][hapmap]
rs13405855	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13417333	1.00[ASN][1000 genomes]
rs17554675	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17618390	0.81[JPT][hapmap]
rs17619354	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2168275	1.00[ASN][1000 genomes]
rs2278718	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs2422005	1.00[ASN][1000 genomes]
rs4567921	0.81[ASN][1000 genomes]
rs4671522	0.81[ASN][1000 genomes]
rs4671527	0.95[ASN][1000 genomes]
rs6546020	0.83[JPT][hapmap]
rs6546021	1.00[ASN][1000 genomes]
rs6546023	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6722981	0.94[ASN][1000 genomes]
rs6723088	0.94[ASN][1000 genomes]
rs72806082	0.83[ASN][1000 genomes]
rs72806089	0.92[ASN][1000 genomes]
rs72806095	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv961781	chr2:63911442-63916913	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63908800-63923400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:63909200-63925600	Weak transcription	Psoas Muscle	Psoas
3	chr2:63911400-63911600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:63911400-63911600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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