Variant report
| Variant | rs2055561 |
|---|---|
| Chromosome Location | chr3:105616628-105616629 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12491881 | 0.84[EUR][1000 genomes] |
| rs1503922 | 0.84[EUR][1000 genomes] |
| rs16844739 | 0.84[EUR][1000 genomes] |
| rs16851470 | 0.84[EUR][1000 genomes] |
| rs16851492 | 1.00[CHB][hapmap];0.84[EUR][1000 genomes] |
| rs16851534 | 0.84[EUR][1000 genomes] |
| rs2055562 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2134716 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2134717 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2301039 | 0.84[EUR][1000 genomes] |
| rs3772535 | 0.84[EUR][1000 genomes] |
| rs57097654 | 0.85[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs57856850 | 0.84[EUR][1000 genomes] |
| rs58424957 | 0.84[EUR][1000 genomes] |
| rs59184166 | 0.84[EUR][1000 genomes] |
| rs59197939 | 0.84[EUR][1000 genomes] |
| rs59358778 | 0.84[EUR][1000 genomes] |
| rs59523739 | 0.84[EUR][1000 genomes] |
| rs59569585 | 0.84[EUR][1000 genomes] |
| rs59612207 | 0.84[EUR][1000 genomes] |
| rs59852986 | 0.95[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs60139983 | 0.84[EUR][1000 genomes] |
| rs60536875 | 0.84[EUR][1000 genomes] |
| rs60737645 | 0.92[EUR][1000 genomes] |
| rs61317978 | 0.84[EUR][1000 genomes] |
| rs61345634 | 0.95[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62255614 | 0.95[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62255615 | 0.95[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62255620 | 0.95[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7622735 | 0.84[EUR][1000 genomes] |
| rs920711 | 1.00[CHB][hapmap];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008564 | chr3:105554580-105643435 | Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1008876 | chr3:105554580-105645373 | Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv877312 | chr3:105560638-105916506 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:105615800-105616800 | Enhancers | Pancreatic Islets | Pancreatic Islet |
| 2 | chr3:105616200-105622000 | Weak transcription | H9 Cell Line | embryonic stem cell |
