Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12491881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493057	0.90[AMR][1000 genomes]
rs1503922	1.00[EUR][1000 genomes]
rs16844739	1.00[EUR][1000 genomes]
rs16851534	1.00[EUR][1000 genomes]
rs2055561	0.84[EUR][1000 genomes]
rs2055562	1.00[EUR][1000 genomes]
rs2134716	0.84[EUR][1000 genomes]
rs2134717	0.84[EUR][1000 genomes]
rs2301039	1.00[EUR][1000 genomes]
rs56895091	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57292140	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57856850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58424957	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59184166	1.00[EUR][1000 genomes]
rs59197939	1.00[EUR][1000 genomes]
rs59358778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59569585	1.00[EUR][1000 genomes]
rs59612207	1.00[EUR][1000 genomes]
rs60139983	1.00[EUR][1000 genomes]
rs60536875	1.00[EUR][1000 genomes]
rs60737645	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61317978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255620	0.84[AMR][1000 genomes]
rs7622735	1.00[EUR][1000 genomes]
rs920711	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105635600-105639000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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