Variant report

Variant	rs56895091
Chromosome Location	chr3:105642263-105642264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12491881	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57097654	1.00[EUR][1000 genomes]
rs57292140	0.82[AMR][1000 genomes]
rs57856850	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58424957	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59358778	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59523739	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59825800	0.97[AFR][1000 genomes]
rs59852986	1.00[EUR][1000 genomes]
rs60737645	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61317978	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61345634	1.00[EUR][1000 genomes]
rs62255614	1.00[EUR][1000 genomes]
rs62255615	1.00[EUR][1000 genomes]
rs62255620	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62255626	0.97[AFR][1000 genomes]
rs62255627	0.97[AFR][1000 genomes]
rs62255629	0.92[AFR][1000 genomes]
rs62255632	0.97[AFR][1000 genomes]
rs62255634	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105640800-105642800	Enhancers	Placenta	Placenta
2	chr3:105641800-105642600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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