Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12491881	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12493057	0.87[AMR][1000 genomes]
rs1503922	1.00[EUR][1000 genomes]
rs16844739	1.00[EUR][1000 genomes]
rs16851470	1.00[EUR][1000 genomes]
rs16851492	1.00[EUR][1000 genomes]
rs16851534	1.00[EUR][1000 genomes]
rs2055561	0.84[EUR][1000 genomes]
rs2055562	1.00[EUR][1000 genomes]
rs2134716	0.84[EUR][1000 genomes]
rs2134717	0.84[EUR][1000 genomes]
rs2301039	1.00[EUR][1000 genomes]
rs56895091	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57292140	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57856850	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59184166	1.00[EUR][1000 genomes]
rs59197939	1.00[EUR][1000 genomes]
rs59358778	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59523739	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59569585	1.00[EUR][1000 genomes]
rs59612207	1.00[EUR][1000 genomes]
rs60139983	1.00[EUR][1000 genomes]
rs60536875	1.00[EUR][1000 genomes]
rs60737645	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61317978	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255620	0.87[AMR][1000 genomes]
rs7622735	1.00[EUR][1000 genomes]
rs920711	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105619000-105623600	Weak transcription	NHDF-Ad	bronchial
2	chr3:105621600-105626800	Weak transcription	Small Intestine	intestine
3	chr3:105623000-105627200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:105623200-105624200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:105623400-105623600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:105623400-105624000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:105623400-105624000	Flanking Active TSS	Hela-S3	cervix
8	chr3:105623400-105624200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:105623400-105624200	Enhancers	NH-A	brain
10	chr3:105623400-105624400	Enhancers	Fetal Heart	heart
11	chr3:105623400-105625200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:105623400-105627000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:105623400-105627000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:105623400-105627000	Enhancers	Osteobl	bone

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