Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12491881	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12493057	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1503922	0.92[EUR][1000 genomes]
rs16844739	0.92[EUR][1000 genomes]
rs16851534	0.92[EUR][1000 genomes]
rs2055562	0.92[EUR][1000 genomes]
rs56747041	0.81[AMR][1000 genomes]
rs56895091	0.82[AMR][1000 genomes]
rs57856850	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58424957	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59184166	0.92[EUR][1000 genomes]
rs59197939	0.92[EUR][1000 genomes]
rs59358778	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59523739	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59569585	0.92[EUR][1000 genomes]
rs59612207	0.92[EUR][1000 genomes]
rs60139983	0.92[EUR][1000 genomes]
rs60536875	0.92[EUR][1000 genomes]
rs60737645	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61317978	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7622735	0.92[EUR][1000 genomes]
rs920711	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105657600-105662600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:105657600-105662600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:105657600-105662600	Weak transcription	NH-A	brain
4	chr3:105657600-105662600	Weak transcription	NHLF	lung
5	chr3:105657600-105663600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:105658000-105662600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:105658000-105662600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:105658000-105662600	Weak transcription	HSMM	muscle
9	chr3:105658000-105662600	Weak transcription	NHDF-Ad	bronchial
10	chr3:105658200-105662600	Weak transcription	HMEC	breast
11	chr3:105658400-105662600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:105658400-105663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:105658400-105663000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:105658600-105662600	Weak transcription	Osteobl	bone

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