Variant report
| Variant | rs62255627 |
|---|---|
| Chromosome Location | chr3:105636553-105636554 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs2455883 | 1.00[ASN][1000 genomes] |
| rs2455885 | 1.00[ASN][1000 genomes] |
| rs2455888 | 1.00[ASN][1000 genomes] |
| rs2470704 | 1.00[ASN][1000 genomes] |
| rs56895091 | 0.97[AFR][1000 genomes] |
| rs57097654 | 1.00[AMR][1000 genomes] |
| rs59825800 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59852986 | 1.00[AMR][1000 genomes] |
| rs61345634 | 1.00[AMR][1000 genomes] |
| rs62255574 | 1.00[ASN][1000 genomes] |
| rs62255581 | 1.00[ASN][1000 genomes] |
| rs62255614 | 1.00[AMR][1000 genomes] |
| rs62255615 | 1.00[AMR][1000 genomes] |
| rs62255617 | 1.00[ASN][1000 genomes] |
| rs62255619 | 1.00[ASN][1000 genomes] |
| rs62255621 | 1.00[ASN][1000 genomes] |
| rs62255622 | 1.00[ASN][1000 genomes] |
| rs62255623 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62255624 | 1.00[ASN][1000 genomes] |
| rs62255625 | 1.00[ASN][1000 genomes] |
| rs62255626 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62255628 | 1.00[ASN][1000 genomes] |
| rs62255629 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62255630 | 1.00[ASN][1000 genomes] |
| rs62255632 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62255634 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62261490 | 1.00[ASN][1000 genomes] |
| rs62261494 | 1.00[ASN][1000 genomes] |
| rs62261537 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008564 | chr3:105554580-105643435 | Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1008876 | chr3:105554580-105645373 | Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv877312 | chr3:105560638-105916506 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:105635600-105639000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
